SubtiBank SubtiBank
ykcC [2018-02-13T12:57:56.000Z]
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ykcC [2018-02-13T12:57:56.000Z]

similar to lipoteichoic acid glycosyltransferase
locus
BSU12890
pI
8.01
mw
37.22 kDa
protein length
323 aa Sequence Blast
gene length
969 bp Sequence Blast
function
decoration of lipoteichoic acid with galactose residues
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    1,356,447 → 1,357,418

    The protein

    Protein family

  • GtrB subfamily (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|824E6AE2FFA3CBC9F90648F15178A00A6CC49E4C|CsbB], [protein|EF18470AD2B07755431534B52A8FCE6754FDBA9D|YkoT]

    • Structure

  • [PDB|5EKP] (from Synechocystis sp., 47% identity) [pubmed|26729507]

    • [SW|Localization]

  • cell membrane (heterogeneous) [Pubmed|16479537]

    • Expression and Regulation

    Operons

    genes
    [gene|7039FCF49F97FFEF37ED48D6F860E3873A5CF308|ykcB]-[gene|FD76A781162795EAF174B59C0A90D2ED3ACC0AB7|ykcC]
    description
    [Pubmed|18175906]

    regulatory mechanism

  • [protein|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ]: activation, [Pubmed|20512483], in [regulon|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ regulon]
  • [protein|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|YrkP]: activation, [Pubmed|18175906], in [regulon|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|YrkP regulon]
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    Biological materials

    Mutant

  • MGNA-A739 (ykcC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/739 NBRP B. subtilis, Japan]
  • BKE12890 (Δ[gene|FD76A781162795EAF174B59C0A90D2ED3ACC0AB7|ykcC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12890 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATGTCTGCTCATGTTTTTGC, downstream forward: _UP4_TAACCTCAAACCCCCTGTCC
  • BKK12890 (Δ[gene|FD76A781162795EAF174B59C0A90D2ED3ACC0AB7|ykcC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12890 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATGTCTGCTCATGTTTTTGC, downstream forward: _UP4_TAACCTCAAACCCCCTGTCC

    • References

  • 20512483,18175906,16479537,21630458,27185829,26729507