SubtiBank SubtiBank
ysmB
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ysmB

similar to transcriptional regulator (MarR family)
locus
BSU_28400
pI
6.51
mw
17.00 kDa
protein length
146 aa Sequence Blast
gene length
441 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    2,904,043 → 2,904,483

    The protein

    [SW|Domains]

  • [SW|HTH marR-type domain] (aa 9-141) (according to UniProt)

    • Structure

  • [PDB|2RDP] (Geobacillus stearothermophilus)

    • Expression and Regulation

    Operons

    genes
    [gene|FBD63332ABDEA7D4837396A0617DA51153781CFE|ysmB]-[gene|36FF9F097682D8BA8D7359BFEAF71ACE8E9E90D8|racE]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B016 (ysmB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1015 NBRP B. subtilis, Japan]
  • BKE28400 (Δ[gene|FBD63332ABDEA7D4837396A0617DA51153781CFE|ysmB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGTCCATCCCTCACTC, downstream forward: _UP4_GAAATGAAGAGAAAATGAGG
  • BKK28400 (Δ[gene|FBD63332ABDEA7D4837396A0617DA51153781CFE|ysmB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28400 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGTCCATCCCTCACTC, downstream forward: _UP4_GAAATGAAGAGAAAATGAGG

    • References

  • 22383849