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gamR [2018-05-24 10:27:19]
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gamR [2018-05-24 10:27:19]

transcriptional repressor (GntR family) of the gamA-gamP operon
locus
BSU02370
pI
5.56
mw
26.45 kDa
protein length
235 aa Sequence Blast
gene length
705 bp Sequence Blast
function
regulation of glucosamine utilization
product
transcriptional regulator (GntR family)
essential
no
synonyms
ybgA
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.3|Cell wall degradation/ turnover] → [category|SW 1.1.3.3|Utilization of cell wall components]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.17|Utilization of amino sugars]
  • [category|SW 2|Metabolism] → [category|SW 2.3|Amino acid/ nitrogen metabolism] → [category|SW 2.3.3|Utilization of nitrogen sources other than amino acids] → [category|SW 2.3.3.3|Utilization of amino sugars]
  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.5|Transcription factors/ other]

    • Gene

    Coordinates
    257,791 → 258,498

    The protein

    Protein family

  • [SW|GntR family] of transcription factors

    • Effectors of protein activity

  • glucosamine-6-phosphate acts as molecular inducer that prevents GamR from binding to its operator sites in the promoter regions of the ''[gene|8BBC9AFF4CD56A3A66E270A2BBA193D095EE01D1|gamA]-[gene|4DF1740D4DFB9FD25E77C14D28AEA01707776099|gamP]'' and ''[gene|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR]-[gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]'' operons [Pubmed|24673833]

    • Expression and Regulation

    Operons

    genes
    [gene|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR]-[gene|2E0FBCA66FB88EDFD345FA289F776C7CA23976F5|ybgB]
    description
    [Pubmed|23667565]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|23667565], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR]: repression, [Pubmed|24673833,23667565], in [regulon|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|GamR regulon]

    • regulation

  • induced by glucosamine ([protein|search|gamR]) [Pubmed|24673833,23667565]
  • induced by glucosamine ([protein|search|GamR]) [Pubmed|24673833,23667565]
    • view in new tab

    Biological materials

    Mutant

  • BKE02370 (Δ[gene|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCATTCTCCCCATTCT, downstream forward: _UP4_TAAAGCAATGTGTTTTAAGA
  • BKK02370 (Δ[gene|FB074E8CFCA1C0198457170A7AFD85C875B34DF2|gamR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCATTCTCCCCATTCT, downstream forward: _UP4_TAAAGCAATGTGTTTTAAGA

    • References

    Reviews

  • 26159076

    • Original publications

  • 10627040,23667565,24673833