SubtiBank SubtiBank
ymfC [2018-10-30 13:00:29]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ymfC [2018-10-30 13:00:29]

similar to transcriptional regulator (GntR family)
locus
BSU16810
pI
6.40
mw
27.75 kDa
protein length
241 aa Sequence Blast
gene length
723 bp Sequence Blast
function
unknown
product
transcriptional regulator (GntR family)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    1,754,785 → 1,755,510

    The protein

    Protein family

  • [SW|GntR family] of transcription factors

    • Expression and Regulation

    Operons

    genes
    [gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]
    description
    [pubmed|22383849]
    view in new tab

    genes
    [gene|125325B485FBC60798EDA4B4BFB24C6FCBC4C513|spoIIIE]-[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|2507870], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B115 (ymfC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1114 NBRP B. subtilis, Japan]
  • BKE16810 (Δ[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16810 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC, downstream forward: _UP4_TAAAAACGGACGCCTGTATG
  • BKK16810 (Δ[gene|F9E0C645BCCD9A299E951D0574321C1FACA8DE4C|ymfC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16810 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCCCCTCCGTAAAC, downstream forward: _UP4_TAAAAACGGACGCCTGTATG

    • References

  • 23504016