SubtiBank SubtiBank
ywoC
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ywoC

unknown
locus
BSU_36490
pI
4.62
mw
20.97 kDa
protein length
189 aa Sequence Blast
gene length
570 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]

    • Gene

    Coordinates
    3,755,291 → 3,755,860

    The protein

    Protein family

  • [SW|Isochorismatase family] (according to UniProt)

    • Structure

  • [PDB|1J2R] (from E. coli, 46% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|42FD1230682897172C3D4EA09980E566835EEF34|ywoB]-[gene|ECBA7A0C8E705A464ACF627EBAFF7482EAEE34F2|ywoC]-[gene|856247843F1073833D51F82AB2928CCDC0DA3E64|ywoD]
    description
    [Pubmed|21856850]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|21856850], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA]: repression, [Pubmed|21856850], in [regulon|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA regulon]

    • regulation

  • induced by ramoplanin ([protein|search|YtrA]) [Pubmed|21856850]
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    Biological materials

    Mutant

  • MGNA-A932 (ywoC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/932 NBRP B. subtilis, Japan]
  • BKE36490 (Δ[gene|ECBA7A0C8E705A464ACF627EBAFF7482EAEE34F2|ywoC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36490 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGTCTCCTCCTGATAC, downstream forward: _UP4_GAGTTTCTGGAACAAGTGAA
  • BKK36490 (Δ[gene|ECBA7A0C8E705A464ACF627EBAFF7482EAEE34F2|ywoC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36490 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACGTCTCCTCCTGATAC, downstream forward: _UP4_GAGTTTCTGGAACAAGTGAA