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recF [2018-05-16 18:28:33]
promoter of RecA DNA repair center assembly
function
DNA repair/ recombination
product
promoter of RecA DNA repair center assembly
Genomic Context
categories
[category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.5|DNA repair/ recombination][category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.5|DNA repair/ recombination] → [category|SW 3.1.5.6|Other proteins]Gene
Coordinates
3,437 → 4,549
Phenotypes of a mutant
drastically reduced survival of mature dormant spores after exposure to ultrahigh vacuum desiccation and ionizing radiation that induce single strand (ss) DNA nicks and double-strand breaks (DSBs) [Pubmed|24285298]The protein
Catalyzed reaction/ biological activity
increases the efficiency of [protein|A44D4677FB70BE8F554BF1001A500F817C7DA95F|RecA] DNA repair center assembly [Pubmed|24891441]Protein family
recF family (according to Swiss-Prot)[SW|Localization]
cytoplasm (according to Swiss-Prot)Expression and Regulation
Operons
genes
[gene|FB1C21A94697E5B9D29C0F3B9C9F36E57BCBD237|yaaA]-[gene|EBE03AEC7EC594A3115A7A72194BDFF300AA0BFA|recF]-[gene|CBC76FB453569550F14FE5015C05D45985C04979|remB]-[gene|AA42910B71348EFEA4165CFFCEF1E497897B9DDC|gyrB]-[gene|B207C7328177924B16F1C606F667BEADF12CA069|gyrA]
description
[Pubmed|22383849]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|2987848], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]view in new tabBiological materials
Mutant
BKE00040 (Δ[gene|EBE03AEC7EC594A3115A7A72194BDFF300AA0BFA|recF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GATATACAATCAGTGTCACC, downstream forward: _UP4_AAGTGAAGAAATGAGGTGAGBKK00040 (Δ[gene|EBE03AEC7EC594A3115A7A72194BDFF300AA0BFA|recF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GATATACAATCAGTGTCACC, downstream forward: _UP4_AAGTGAAGAAATGAGGTGAGReferences
Reviews
Original publications
2987848,15186413,9207023,24285298,24891441,1716726,1909186,8510642