SubtiBank SubtiBank
ydgJ
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ydgJ

similar to transcriptional regulator ([SW|MarR family])
locus
BSU_05670
pI
9.35
mw
18.66 kDa
protein length
164 aa Sequence Blast
gene length
495 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    612,836 → 613,330

    The protein

    Protein family

  • [SW|MarR family]

    • [SW|Domains]

  • [SW|HTH marR-type domain] (aa 28-157) (according to UniProt)

    • Structure

  • [PDB|3BDD] (MarR from Streptococcus suis, corresponds to aa 27 ... 134, 37% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|E8D1416DB588A4D72E84341F5EAB845E77A84792|ydgJ]-[gene|8EE3F368AB1CD4BB14E42135D63D27138D3FED03|ydgI]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C162 (ydgJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2160 NBRP B. subtilis, Japan]
  • BKE05670 (Δ[gene|E8D1416DB588A4D72E84341F5EAB845E77A84792|ydgJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTAATATACAACGATTG, downstream forward: _UP4_GAAGCTTAAGAGGAGTGTAT
  • BKK05670 (Δ[gene|E8D1416DB588A4D72E84341F5EAB845E77A84792|ydgJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTAATATACAACGATTG, downstream forward: _UP4_GAAGCTTAAGAGGAGTGTAT