SubtiBank SubtiBank
ycgE
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ycgE

similar to transcription regulator
locus
BSU_03080
pI
8.45
mw
17.10 kDa
protein length
155 aa Sequence Blast
gene length
465 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    334,092 → 334,556

    The protein

    [SW|Domains]

  • [SW|HTH marR-type domain] (aa 7-143) (according to UniProt)

    • Structure

  • [PDB|4XRF] (from B. cereus, corresponds to aa 34 ... 136, 32.2% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|D948867BAEF91943250714453A474B90AB64E523|ycgE]-[gene|78B3F9580DED32469ACF537F4B40C7DBF0D4D995|ycgF]-[gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C049 (ycgE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2047 NBRP B. subtilis, Japan]
  • BKE03080 (Δ[gene|D948867BAEF91943250714453A474B90AB64E523|ycgE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03080 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTGACAGTCCTCCCTAT, downstream forward: _UP4_TAAGTGAATTTGTGCATAGC
  • BKK03080 (Δ[gene|D948867BAEF91943250714453A474B90AB64E523|ycgE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03080 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTGACAGTCCTCCCTAT, downstream forward: _UP4_TAAGTGAATTTGTGCATAGC