SubtiBank SubtiBank
ysdC [2018-02-13T02:17:10.000Z]
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ysdC [2018-02-13T02:17:10.000Z]

similar to endo-1,4-beta-glucanase
locus
BSU28820
pI
5.55
mw
39.06 kDa
protein length
361 aa Sequence Blast
gene length
1083 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.27|Utilization of other polymeric carbohydrates]

    • Gene

    Coordinates
    2,950,221 → 2,951,306

    The protein

    Protein family

  • peptidase M42 family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|16585F4118F3D2732D6780D351B7AA5F6DDCCEB8|YtoP]

    • Structure

  • [PDB|1VHE]

    • [SW|Localization]

  • secreted (according to Swiss-Prot)

    • additional information

  • belongs to the 100 [SW|most abundant proteins] [PubMed|15378759]

    • Expression and Regulation

    Operons

    genes
    [gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A999 (ysdC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/999 NBRP B. subtilis, Japan]
  • BKE28820 (Δ[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCAAACCCTCCTTC, downstream forward: _UP4_TAAAGATACGGAAGAATCCG
  • BKK28820 (Δ[gene|D6F5F7C1C699C674FA7AC09A020E8E2F571E1AA9|ysdC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCCAAACCCTCCTTC, downstream forward: _UP4_TAAAGATACGGAAGAATCCG

    • References

  • 15378759