SubtiBank SubtiBank
ydjA
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ydjA

component of the BsuM DNA restriction system
locus
BSU_06110
pI
8.33
mw
54.17 kDa
protein length
465 aa Sequence Blast
gene length
1398 bp Sequence Blast
function
BsuM DNA restriction
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.4|DNA restriction/ modification]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.5|Prophage 3]

    • Gene

    Coordinates
    661,630 → 663,027

    The protein

    Catalyzed reaction/ biological activity

  • Endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|4BD4CFB10700907DF1BBF3C9CFACAF573588E85F|ydiR]-[gene|A8C606348C8C6FC3BB9786C06C9BFE9D3519A041|ydiS]-[gene|D36B91B3C8EAFEB80A7395C62A50A5F80B8CC5C5|ydjA]
    description
    [Pubmed|11751814]
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    Biological materials

    Mutant

  • MGNA-C209 (ydjA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2207 NBRP B. subtilis, Japan]
  • BKE06110 (Δ[gene|D36B91B3C8EAFEB80A7395C62A50A5F80B8CC5C5|ydjA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GAACTTACTTGACTTATCCA, downstream forward: _UP4_TAGTTCTAGAAGGTTAAAAG
  • BKK06110 (Δ[gene|D36B91B3C8EAFEB80A7395C62A50A5F80B8CC5C5|ydjA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06110 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GAACTTACTTGACTTATCCA, downstream forward: _UP4_TAGTTCTAGAAGGTTAAAAG

    • References

  • 11751814,22092861