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yrbF [2019-06-12 09:31:08]
Genomic Context
categories
[category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.5|Protein secretion][category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]Gene
Coordinates
2,832,424 → 2,832,690
The protein
Protein family
UPF0092 family (according to Swiss-Prot)Expression and Regulation
Operons
genes
[gene|7EBC90946E7167A3B0212193873855CAE0EFF7D4|ruvA]-[gene|8DFD57B73FE5D49BB547E050182A96CE6E8BFF77|ruvB]-[gene|6CDF1836F5B613A6718308A4A27D713193EA197B|yrzS]-[gene|23174B2A19DEDF2F20858A005D0681D36E15E6E3|queA]-[gene|0383C8214ADE2FF70CFDB953A65648B37A9D3216|tgt]-[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]
description
[pubmed|22383849]
regulation
the mRNA is processed between [gene|0383C8214ADE2FF70CFDB953A65648B37A9D3216|tgt] and [gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]view in new tabgenes
[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]
description
[Pubmed|22383849]
Biological materials
Mutant
BKE27700 (Δ[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTTTCACCCCTTTCT, downstream forward: _UP4_TAACAGCAGGAGCTATACATBKK27700 (Δ[gene|D15B74263167DAD3FA9B7384B5AA4897EAD498F2|yrbF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTTTCACCCCTTTCT, downstream forward: _UP4_TAACAGCAGGAGCTATACATReferences
