SubtiBank SubtiBank
ypbE
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ypbE

peptidoglycan-binding protein, likely involved in sidewall synthesis during cell growth
locus
BSU_23000
pI
5.43
mw
27.14 kDa
protein length
240 aa Sequence Blast
gene length
723 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.8|Cell division] → [category|SW 1.1.8.2|Other genes]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,405,620 → 2,406,342

    The protein

    [SW|Domains]

  • contains a N-acetylglucosamine-polymer-binding [SW|LysM domain] (aa 189-235) [Pubmed|18430080]
  • [SW|LysM domain] (aa 189-235) (according to UniProt)

    • Effectors of protein activity

  • binding to peptidoglycan is stimulated by YpbE multimerisation, induced by hexameric [protein|C22F7704DC9D36D96FE089ADCEA546D7A3FB3739|GpsB] [pubmed|30651563]

    • [SW|Localization]

  • cell membrane [pubmed|30651563]

    • Biological materials

    Mutant

  • MGNA-A395 (ypbE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/395 NBRP B. subtilis, Japan]
  • BKE23000 (Δ[gene|CF81E3A0CD4A65B29583E7F7D85C9B59D8C7791C|ypbE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE23000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GTCCGCCAATGCGGCGTTTT, downstream forward: _UP4_TAGGGTATTATTTTTATTTT
  • BKK23000 (Δ[gene|CF81E3A0CD4A65B29583E7F7D85C9B59D8C7791C|ypbE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK23000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GTCCGCCAATGCGGCGTTTT, downstream forward: _UP4_TAGGGTATTATTTTTATTTT

    • References

    Reviews

  • 18430080

    • Research papers

  • 30651563