SubtiBank SubtiBank
yfiF [2020-04-14 18:45:49]
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yfiF [2020-04-14 18:45:49]

similar to transcription factor ([SW|AraC family])
locus
BSU_08250
pI
8.08
mw
36.04 kDa
protein length
314 aa Sequence Blast
gene length
945 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    898,961 → 899,905

    The protein

    Protein family

  • [SW|AraC family]

    • [SW|Domains]

  • [SW|HTH araC/xylS-type domain] (aa 192-289) (according to UniProt)

    • Structure

  • [PDB|1BL0] (from E. coli, the [SW|HTH araC/xylS-type domain], 35% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|CC5ED09FC661476160443898A083FF41A1F70DCE|yfiF]
    description
    (according to [http://dbtbs.hgc.jp/COG/prom/yfiF.html DBTBS]) null
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    Biological materials

    Mutant

  • MGNA-C296 (yfiF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2294 NBRP B. subtilis, Japan]
  • BKE08250 (Δ[gene|CC5ED09FC661476160443898A083FF41A1F70DCE|yfiF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTAAACGCCTCCTAACA, downstream forward: _UP4_TAAGATGTCCTGAAATGACA
  • BKK08250 (Δ[gene|CC5ED09FC661476160443898A083FF41A1F70DCE|yfiF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTAAACGCCTCCTAACA, downstream forward: _UP4_TAAGATGTCCTGAAATGACA

    • References

  • 23504016