SubtiBank SubtiBank
ydeF
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ydeF

similar to transcriptional regulator ([SW|MocR/ GabR family])
locus
BSU_05180
pI
6.09
mw
51.64 kDa
protein length
465 aa Sequence Blast
gene length
1398 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    564,704 → 566,101

    The protein

    Protein family

  • [SW|MocR/ GabR family] [Pubmed|22020104]
  • [SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)

    • [SW|Domains]

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
  • [SW|HTH gntR-type domain] (aa 22-90) (according to UniProt)

    • [SW|Cofactors]

  • PLP

    • Structure

  • [PDB|4MGR] ([protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], 23% identity) [pubmed|24127574]

    • Biological materials

    Mutant

  • MGNA-C082 (ydeF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2080 NBRP B. subtilis, Japan]
  • BKE05180 (Δ[gene|C2EB2BE786A5C155DE440E52CB430B25E70C8AA7|ydeF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATACGCATCCTTTTTC, downstream forward: _UP4_TAATATTGTTTGCCATACAA
  • BKK05180 (Δ[gene|C2EB2BE786A5C155DE440E52CB430B25E70C8AA7|ydeF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATACGCATCCTTTTTC, downstream forward: _UP4_TAATATTGTTTGCCATACAA

    • References

  • 11756427,22020104,24127574