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liaF [2020-10-31 16:26:53]
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liaF [2020-10-31 16:26:53]

inhibitor of [protein|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|LiaS] kinase activity
locus
BSU_33100
pI
9.21
mw
26.88 kDa
protein length
241 aa Sequence Blast
gene length
726 bp Sequence Blast
function
control of [protein|49E70A20CC05DBE485953C0AE34E634EFB33C3B2|LiaR] activity
product
negative effector of [protein|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|LiaS]
essential
no
synonyms
yvqF
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.2|Control of two-component response regulators] → [category|SW 3.4.2.2.3|Control of response regulators/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.13|Resistance against toxins/ antibiotics]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.8|Resistance against oxidative and electrophile stress]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,396,114 → 3,396,839

    The protein

    Catalyzed reaction/ biological activity

  • inhibitor of [protein|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|LiaS] kinase activity, maintains [protein|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|LiaS] in the phosphatase state in the absence of the stress signal [Pubmed|23279150]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|A71B0392FFF70EFFC096E7E9BD5FE30792821CDD|liaG]-[gene|C107A958DFA2B0DA4837E2F9F648CD329A3116AC|liaF]-[gene|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|liaS]-[gene|49E70A20CC05DBE485953C0AE34E634EFB33C3B2|liaR]
    description
    [Pubmed|16816187]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|15273097], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|49E70A20CC05DBE485953C0AE34E634EFB33C3B2|LiaR]: activation, [Pubmed|16816187], in [regulon|49E70A20CC05DBE485953C0AE34E634EFB33C3B2|LiaR regulon]

    • regulation

  • ''[protein|search|liaG]'': constitutive
    • view in new tab

    genes
    [gene|B6D1159454969D1D578E05D5CE2259E079688510|liaI]-[gene|AE4BF12C368468C553EED7A696D5EFC63F56CA39|liaH]-[gene|A71B0392FFF70EFFC096E7E9BD5FE30792821CDD|liaG]-[gene|C107A958DFA2B0DA4837E2F9F648CD329A3116AC|liaF]-[gene|9A1871BD853254EEA8B4E78CA187F9315CBDF43D|liaS]-[gene|49E70A20CC05DBE485953C0AE34E634EFB33C3B2|liaR]
    description
    [Pubmed|14651641]

    regulation

  • ''[protein|search|liaG]'': constitutive
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B037 (yvqF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1036 NBRP B. subtilis, Japan]
  • BKE33100 (Δ[gene|C107A958DFA2B0DA4837E2F9F648CD329A3116AC|liaF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCTGGTGTCCGCCTCC, downstream forward: _UP4_GGTGATGTGGATGTGAAGTA
  • BKK33100 (Δ[gene|C107A958DFA2B0DA4837E2F9F648CD329A3116AC|liaF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCCTGGTGTCCGCCTCC, downstream forward: _UP4_GGTGATGTGGATGTGAAGTA

    • References

    Reviews

  • 27344142

    • Original publications

  • 19164152,20639339,15273097,17660417,16816187,15101989,17660417,16816187,23279150,20817675,22092710,23326432