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yyaF [Thu Oct 01 2015 13:51:44 GMT+0200 (CEST)]
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yyaF [Thu Oct 01 2015 13:51:44 GMT+0200 (CEST)]

GTP-binding protein/ GTPase
locus
BSU40920
pI
4.66
mw
39.00 kDa
function
unknown
product
GTP-binding protein/ GTPase
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.3|GTP-binding proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • [SW|Categories] containing this gene/protein

  • [SW|GTP-binding proteins], [SW|proteins of unknown function]
  • This gene is a member of the following [SW|regulons]

  • [SW|ComK regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    4,199,843 -> 4,200,943

    The protein

    Catalyzed reaction/ biological activity

  • Binds and hydrolyzes GTP and readily exchanges GDP for GTP
  • Protein family

  • EngD subfamily (according to Swiss-Prot) Era/Obg family
  • Paralogous protein(s)

  • [protein|search|Era], [protein|search|Obg], [protein|search|YphC], [protein|search|YsxC], [protein|search|RbgA], [protein|search|YqeH], [protein|search|ThdF], [protein|search|YyaF], [protein|search|YnbA]
  • Expression and Regulation

    Operon

  • ''[protein|search|yyaF]-[protein|search|rpsF]-[protein|search|ssbA]-[protein|search|rpsR]'' [Pubmed|14762004]
  • Regulation

  • [protein|search|RelA] dependent downregulation (Class I) during stringent response [Pubmed|11948165]
  • [protein|search|ComK]: transcription activation [Pubmed|11948146]
  • Biological materials

    Expression vector

  • for expression/ purification from ''B. subtilis'' with N-terminal Strep-tag, for [SW|SPINE], in [SW|pGP380]: pGP836, available in [SW|Stülke] lab
  • for expression/ purification from ''E. coli'' with N-terminal His-tag, in [SW|pWH844]: pGP844, available in [SW|Stülke] lab
  • Labs working on this gene/protein

  • [SW|Naotake Ogasawara], Nara, Japan
  • References

    Reviews

  • 21885683
  • Original publications

  • 12427945,14762004,11948165,11948146