SubtiBank SubtiBank
yrkC
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yrkC

mother cell-specific sporulation protein
locus
BSU_26560
pI
7.35
mw
21.11 kDa
protein length
186 aa Sequence Blast
gene length
561 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    2,714,933 → 2,715,493

    The protein

    [SW|Domains]

  • [SW|cupin 2 domain] (aa 89 ... 164)

    • Structure

  • [PDB|2OA2] (the [SW|cupin 2 domain], from B. halodurans, 66% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|BBF2D58DFC1E345BB841AFDFEF5E651715B1426B|yrkC]-[gene|B97A503AA247375DCA28009A7D3895F6327BE3F5|yrzN]
    description
    [Pubmed|22383849,12480901]

    sigma factors

  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|15699190,12480901], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]

    • regulation

  • expressed late during sporulation in the mother cell ([protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]) [Pubmed|15699190,12480901]
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    Biological materials

    Mutant

  • MGNA-C456 (yrkC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2454 NBRP B. subtilis, Japan]
  • BKE26560 (Δ[gene|BBF2D58DFC1E345BB841AFDFEF5E651715B1426B|yrkC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26560 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTGATCCCCGCAAT, downstream forward: _UP4_TAGCACAGATATTCTGGAGA
  • BKK26560 (Δ[gene|BBF2D58DFC1E345BB841AFDFEF5E651715B1426B|yrkC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26560 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTTGATCCCCGCAAT, downstream forward: _UP4_TAGCACAGATATTCTGGAGA

    • References

  • 15699190,12480901