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ykfD [Tue Dec 13 2016 11:16:32 GMT+0100 (CET)]
similar to oligopeptide ABC transporter (permease)
Genomic Context
categories
[category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.3|Uptake of peptides][category|SW 2|Metabolism] → [category|SW 2.3|Amino acid/ nitrogen metabolism] → [category|SW 2.3.3|Utilization of nitrogen sources other than amino acids] → [category|SW 2.3.3.4|Utilization of peptides][category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins][SW|Categories] containing this gene/protein
[SW|ABC transporters], [SW|utilization of nitrogen sources other than amino acids], [SW|membrane proteins]This gene is a member of the following [SW|regulons]
[SW|CodY regulon]Gene
Coordinates on the chromosome (coding sequence)
1,368,844 -> 1,369,833
The protein
Structure
[PDB|4FWI] (dipeptide transporter from ''Thermoanaerobacter tengcongensis'', 36% identity) [Pubmed|23385461][SW|Localization]
attached to the cell membrane (via [protein|search|DppB]-[protein|search|DppC]) [Pubmed|10092453][SW|Interactions]
([protein|search|DppD]-[protein|search|YkfD])-([protein|search|DppB]-[protein|search|DppC])-[protein|search|DppE] [Pubmed|10092453]Expression and Regulation
Regulation
repressed by [protein|search|CodY] [Pubmed|12618455]Regulatory mechanism
[protein|search|CodY]: transcription repression [Pubmed|12618455]References
12618455,10092453,23385461 
