SubtiBank SubtiBank
ypuD [2018-03-18 12:28:03]
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ypuD [2018-03-18 12:28:03]

unknown
locus
BSU23300
pI
7.03
mw
12.61 kDa
protein length
114 aa Sequence Blast
gene length
342 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

    • Gene

    Coordinates
    2,431,737 → 2,432,081

    Expression and Regulation

    Operons

    genes
    [gene|B2DC4E57065C76E3A67D05BDDF53B7067345B94B|ypuD]
    description
    [Pubmed|7934830]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|11544224], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]

    • regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]

    • regulation

  • induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]
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    Biological materials

    Mutant

  • MGNA-A092 (ypuD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/92 NBRP B. subtilis, Japan]
  • BKE23300 (Δ[gene|B2DC4E57065C76E3A67D05BDDF53B7067345B94B|ypuD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE23300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCTAAACCTCCAGCCA, downstream forward: _UP4_TAAAAAACATCACCTTTCGG
  • BKK23300 (Δ[gene|B2DC4E57065C76E3A67D05BDDF53B7067345B94B|ypuD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK23300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCTAAACCTCCAGCCA, downstream forward: _UP4_TAAAAAACATCACCTTTCGG

    • References

  • 16267290,11544224,7934830,18179421