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ydfD

similar to transcriptional regulator ([SW|MocR/ GabR family])

locus

BSU_05370

9.10

54.07 kDa

protein length

482 aa Sequence Blast

gene length

1449 bp Sequence Blast

function

unknown

product

unknown

essential

synonyms

Outlinks

KEGG BsubCyc SubtiList UniProt Expression Browser

Genomic Context

Hide small RNAs Zoom:

categories

[category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates

583,589 → 585,037

The protein

Protein family

[SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)

[SW|MocR/ GabR family] [Pubmed|22020104]

Paralogous protein(s)

[protein|6A3F08CD939CCDEC1F784D658B815A6D0E1AAC3D|YisV]

[SW|Domains]

N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

[SW|HTH gntR-type domain] (aa 12-80) (according to UniProt)

[SW|Cofactors]

PLP

Structure

[PDB|1WST] (aminotransferase from Thermococcus profundus, 30% identity)

Biological materials

Mutant

MGNA-C144 (ydfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2142 NBRP B. subtilis, Japan]

BKE05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT

BKK05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT

References

11756427,22020104