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ydaN
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ydaN

general stress protein, synthesis of extracellular polysaccharide
locus
BSU_04310
pI
5.36
mw
77.03 kDa
protein length
703 aa Sequence Blast
gene length
2112 bp Sequence Blast
function
synthesis of extracellular polysaccharide
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]

    • Gene

    Coordinates
    483,845 485,956

    The protein

    Protein family

  • bacterial cellulose synthase family

    • [SW|Localization]

  • cell membrane, forms clusters at the cell poles and septa (with [protein|70ED3CE683F3A3F785480F40986CABE7729C17C7|YdaK] and [protein|961538BEDD27C24FC073AFB7AB3268E3D46783CC|YdaM]) [Pubmed|27897378]

    • Expression and Regulation

    Operons

    genes
    [gene|69DEE29383E40F49890CC8314DFBF56D70D35113|ydaJ]-[gene|70ED3CE683F3A3F785480F40986CABE7729C17C7|ydaK]-[gene|28D80C5497AE29A24AD6B9A1A713A2B3915F2CED|ydaL]-[gene|961538BEDD27C24FC073AFB7AB3268E3D46783CC|ydaM]-[gene|ADE0122D8FFF2F78B6D21031B7D02A323A13ED63|ydaN]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|22383849], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • expressed during stress ([protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]) [Pubmed|22383849]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C077 (ydaN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2075 NBRP B. subtilis, Japan]
  • JH642 and its derivatives: natural deletion of the 18 kb [gene|467E9CF20B545A976614968E7DD5497F9390D344|ydzA]-[gene|353DADE8E57A0F1895CCEB62701F9273EEB5EB45|mntH] region encompassing the genes [gene|467E9CF20B545A976614968E7DD5497F9390D344|ydzA]-[gene|7D5327BD1DD5FD5F90B2C849589923AA3D8B20EF|topB]-[gene|69DEE29383E40F49890CC8314DFBF56D70D35113|ydaJ]-[gene|70ED3CE683F3A3F785480F40986CABE7729C17C7|ydaK]-[gene|28D80C5497AE29A24AD6B9A1A713A2B3915F2CED|ydaL]-[gene|961538BEDD27C24FC073AFB7AB3268E3D46783CC|ydaM]-[gene|ADE0122D8FFF2F78B6D21031B7D02A323A13ED63|ydaN]-[gene|5968E6D4D7378C69EC3E1E05B285069123AA1FD3|kimA]-[gene|6085BDAD40F719555EA4EEA7BBAD74103BD03D0F|mutT]-[gene|2883FC60CD69948D5C43BDDFEFBE7A1CA7C743C7|ydaP]-[gene|87834D5C47064BEFF26F086A8202C311F28F9D38|ydzK]-[gene|search|mntH ][pubmed|18670626]
  • BKE04310 ([gene|ADE0122D8FFF2F78B6D21031B7D02A323A13ED63|ydaN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AATCATTATTTGTTTCAAAA, downstream forward: _UP4_TAAAACAGAGGCGATTTTAG
  • BKK04310 ([gene|ADE0122D8FFF2F78B6D21031B7D02A323A13ED63|ydaN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AATCATTATTTGTTTCAAAA, downstream forward: _UP4_TAAAACAGAGGCGATTTTAG

    • References

    Reviews

  • 28296273

    • Original publications

  • 22383849,27897378