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rhiL [2018-05-04 12:19:13]
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rhiL [2018-05-04 12:19:13]

ABC transporter (sugar-binding protein) for rhamnose oligosaccharides
locus
BSU06970
pI
4.99
mw
46.45 kDa
protein length
412 aa Sequence Blast
gene length
1236 bp Sequence Blast
function
uptake of rhamnose oligosaccharides
product
rhamnose oligosaccharide ABC transporter
essential
no
synonyms
yesO
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    761,662 → 762,945

    The protein

    Protein family

  • bacterial solute-binding protein 1 family (according to Swiss-Prot)

    • Structure

  • [PDB|4R6K]

    • [SW|Localization]

  • associated to the membrane (via [protein|2DC415DCC2ECC3B46526108638DDB46C28832041|RhiF]-[protein|0B11FACEB5E96D166AC1EA0E32C68FCDAF8327E4|RhiG]) [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|A96A83684E1E6E8705265D3932DA60FF47C23E3B|rhiL]-[gene|2DC415DCC2ECC3B46526108638DDB46C28832041|rhiF]-[gene|0B11FACEB5E96D166AC1EA0E32C68FCDAF8327E4|rhiG]-[gene|8EED04FCE6E2900B729178209FB281F5463B2540|rhiN]
    description
    [Pubmed|33122638]

    regulation

  • induced in colonies growing on steamed soybeans [Pubmed|33122638]
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    Biological materials

    Mutant

  • MGNA-A947 (yesO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/947 NBRP B. subtilis, Japan]
  • BKE06970 (Δ[gene|A96A83684E1E6E8705265D3932DA60FF47C23E3B|rhiL]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06970 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAACCAATCCCCCCTTTAA, downstream forward: _UP4_AATGAGATATTAGAGAGGAA
  • BKK06970 (Δ[gene|A96A83684E1E6E8705265D3932DA60FF47C23E3B|rhiL]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06970 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAACCAATCCCCCCTTTAA, downstream forward: _UP4_AATGAGATATTAGAGAGGAA

    • References

  • 10092453,17449691,24391637