SubtiBank SubtiBank
ydeE
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ydeE

similar to transcription factor (AraC family)
locus
BSU_05170
pI
7.22
mw
33.10 kDa
protein length
290 aa Sequence Blast
gene length
873 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    563,614 564,486

    The protein

    Protein family

  • [SW|AraC family]

    • [SW|Domains]

  • [SW|HTH araC/xylS-type domain] (aa 8-106) (according to UniProt)

    • Structure

  • [PDB|1XS9] (from E. coli, N-terminal [SW|HTH araC/xylS-type domain], 33% identity) [pubmed|15458404]

    • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)

    • Biological materials

    Mutant

  • MGNA-C081 (ydeE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2079 NBRP B. subtilis, Japan]
  • BKE05170 ([gene|A26310839513EE348585D57E623CD5213B5C768B|ydeE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA, downstream forward: _UP4_TAATACGTTTTTCAATCAGA
  • BKK05170 ([gene|A26310839513EE348585D57E623CD5213B5C768B|ydeE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATTTGGCCTCCTTTA, downstream forward: _UP4_TAATACGTTTTTCAATCAGA

    • References

  • 23504016,15458404