SubtiBank SubtiBank
ydbP
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ydbP

similar to thioredoxin
locus
BSU_04550
pI
4.39
mw
12.29 kDa
protein length
106 aa Sequence Blast
gene length
321 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.4|Electron transport/ other/ based on similarity]

    • Gene

    Coordinates
    507,753 508,073

    The protein

    Protein family

  • [SW|Thioredoxin family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|4E5C84FDC8FE2FEFF47306C91ECAB7F17D3E38E9|TrxA]

    • [SW|Domains]

  • Thioredoxin domain (aa 1-106) (according to UniProt)

    • Structure

  • [PDB|4RUV] (from ''Staphylococcus aureus'', 57% identity)

    • [SW|Localization]

  • cytoplasm (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C109 (ydbP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2107 NBRP B. subtilis, Japan]
  • BKE04550 ([gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04550 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGTCACATCTCCTTTT, downstream forward: _UP4_ATAAGCTAATTCGTTAAACA
  • BKK04550 ([gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04550 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGTCACATCTCCTTTT, downstream forward: _UP4_ATAAGCTAATTCGTTAAACA

    • References

  • 10482513