SubtiBank SubtiBank
ymfH
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ymfH

similar to peptidase
locus
BSU_16860
pI
4.94
mw
47.04 kDa
protein length
428 aa Sequence Blast
gene length
1287 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    1,758,314 1,759,600

    The protein

    Protein family

  • [SW|Peptidase M16 family] (according to UniProt)

    • Structure

  • [PDB|4XEA] (from Alicyclobacillus acidocaldarius, 43% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|11997FE6BA6947E7C7E3DBE20B49C9FB758262B2|ymfD]-[gene|43BADA6A6C8248270A50EB3D81253ECE6C84F03F|ymfF]-[gene|9A5EB7CA38D948007AD788297128035AB4074490|ymfH]
    description
    [Pubmed|18502870]

    regulatory mechanism

  • [protein|A7326377132C670B60695EFE0A652B1E4F623698|Mta]: activation, [Pubmed|18502870], in [regulon|A7326377132C670B60695EFE0A652B1E4F623698|Mta regulon]
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    Biological materials

    Mutant

  • MGNA-A025 (ymfH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/25 NBRP B. subtilis, Japan]
  • BKE16860 ([gene|9A5EB7CA38D948007AD788297128035AB4074490|ymfH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTGTTCATATTCGATTGGTT, downstream forward: _UP4_TAAACAAAACATCCCTCCAG
  • BKK16860 ([gene|9A5EB7CA38D948007AD788297128035AB4074490|ymfH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTGTTCATATTCGATTGGTT, downstream forward: _UP4_TAAACAAAACATCCCTCCAG

    • References

  • 18502870