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yonT [2019-05-12 18:09:56]
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yonT [2019-05-12 18:09:56]

toxin
locus
BSU21000
pI
12.86
mw
6.78 kDa
protein length
58 aa Sequence Blast
gene length
177 bp Sequence Blast
function
unknown
product
toxin
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.1|Type 1 TA systems]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]
  • [category|SW 6|Groups of genes] → [category|SW 6.9|NcRNA] → [category|SW 6.9.6|Antisense RNAs of toxin/antitoxin systems]

    • Gene

    Coordinates
    2,219,784 2,219,960

    RNA

    additional information

  • [gene|search|yonT ]mRNA half-life: 8 min [pubmed|29414903]

    • The protein

    Protein family

  • panD family (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|961DB64225CEF84D80982ADBDC9BBBCDF5049132|yonT]-[gene|A01986F131F973AFE08CC28E89CB70FD2BED06EE|yoyJ]-[gene|21DF0BF609522F9FFF636A9AF99779A459166A8D|yonU]-[gene|ED02B21A2296C6A5A19007810D0416FCBAF5B9ED|yonV]
    description
    [Pubmed|29414903]
    view in new tab

    genes
    [gene|961DB64225CEF84D80982ADBDC9BBBCDF5049132|yonT]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|8832F99BF927D5A4D6CB265DB24D3AE46434A5CD|SR6]: antisense RNA, in [regulon|8832F99BF927D5A4D6CB265DB24D3AE46434A5CD|SR6 regulon]
    • view in new tab

    Biological materials

    Mutant

  • BKE21000 ([gene|961DB64225CEF84D80982ADBDC9BBBCDF5049132|yonT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE21000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTATGTACACCTCCTTTC, downstream forward: _UP4_TGAGAGCTAAGCTAAAGGGG
  • BKK21000 ([gene|961DB64225CEF84D80982ADBDC9BBBCDF5049132|yonT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK21000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTATGTACACCTCCTTTC, downstream forward: _UP4_TGAGAGCTAAGCTAAAGGGG

    • References

    Reviews

  • 23300472

    • Original publications

  • 20156992,19210617,23300471,29414903