SubtiBank SubtiBank
yncB [2018-10-30 17:09:14]
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yncB [2018-10-30 17:09:14]

similar to micrococcal nuclease
locus
BSU17620
pI
9.21
mw
23.54 kDa
protein length
211 aa Sequence Blast
gene length
633 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    1,895,378 → 1,896,013

    The protein

    Paralogous protein(s)

  • [protein|27F32FB0F96276325ED93710DF77B949658D728D|YokF]

    • Structure

  • [PDB|4I65] (from Staphylococcus aureus, corresponds to aa 69 ... 169 of YncB, 58% identity)

    • [SW|Localization]

  • Cytoplasm (homogeneous) [Pubmed|16479537]

    • Expression and Regulation

    Operons

    genes
    [gene|91E6B4971F22B5A5F964590F8B14D6C73A4C4840|yncB]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B100 (yncB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1099 NBRP B. subtilis, Japan]
  • BKE17620 (Δ[gene|91E6B4971F22B5A5F964590F8B14D6C73A4C4840|yncB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE17620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTGATTCCCTCTTTAT, downstream forward: _UP4_TAGAAAAACACTGTTTGTTA
  • BKK17620 (Δ[gene|91E6B4971F22B5A5F964590F8B14D6C73A4C4840|yncB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK17620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTGATTCCCTCTTTAT, downstream forward: _UP4_TAGAAAAACACTGTTTGTTA

    • References

  • 16479537