SubtiBank SubtiBank
xkdC
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xkdC

PBSX prophage
locus
BSU_12530
pI
7.97
mw
30.38 kDa
protein length
266 aa Sequence Blast
gene length
801 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ykxC
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.1|PBSX prophage]

    • Gene

    Coordinates
    1,322,750 1,323,550

    The protein

    Paralogous protein(s)

  • [protein|F301EA8201BF27BAFAD4F95EC3A580A91B970B06|YqaM]

    • Structure

  • [PDB|2W58] ([protein|AC1B507C6B1640E9BEA1F9F01628120F3680C976|DnaI] of Geobacillus kaustophilus, the C-terminus of XkdC, corresponds to aa 89 ... 229, 31% identity) [pubmed|19744498]

    • [SW|Localization]

  • cytoplasm (homogeneous) [Pubmed|16479537]

    • Expression and Regulation

    Operons

    genes
    [gene|677A695D276C25B39B6A8F84664A778305A02C1C|yjzJ]-[gene|AEE450C33EB9966BEC0050FC06B43645CB5FDEF5|xkdB]-[gene|8766A2EE18B75E50C5369AB8B72AD934F82D7545|xkdC]-[gene|F8401768BBDD5EAA68D52119B07AD32FF5B084EE|ykzK]-[gene|FCA8F57256D7048C67D899815975D02FF46BB8BA|xkdD]-[gene|FE1372F14C9E6BBF62DB24E6C27A74B4AE6FDA59|xtrA]
    description
    [Pubmed|22383849,8083174]

    regulatory mechanism

  • [protein|25F494F32E200FC0FE4C81A05B0F70CB449673EA|Xre]: repression, [Pubmed|8083174], in [regulon|25F494F32E200FC0FE4C81A05B0F70CB449673EA|Xre regulon]
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    References

  • 16479537,8083174,19744498