SubtiBank SubtiBank
ydgG [2019-02-19 19:52:26]
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ydgG [2019-02-19 19:52:26]

similar to transcriptional regulator ([SW|MarR family])
locus
BSU05640
pI
5.62
mw
17.13 kDa
protein length
152 aa Sequence Blast
gene length
459 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    608,933 609,391

    The protein

    Protein family

  • [SW|MarR family]

    • Expression and Regulation

    Operons

    genes
    [gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]-[gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]
    description
    [Pubmed|16267290]

    regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]

    • regulation

  • induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]
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    Biological materials

    Mutant

  • MGNA-C160 (ydgG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2158 NBRP B. subtilis, Japan]
  • CS209 (''[gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]''::''aphA3'', available in [SW|Colin Harwood]'s and [SW|Jrg Stlke]'s labs) [Pubmed|27197833]
  • BKE05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT, downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC
  • BKK05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT, downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC

    • References

  • 16267290,27197833