SubtiBank SubtiBank
ywbF
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ywbF

unknown
locus
BSU_38340
pI
9.70
mw
43.85 kDa
protein length
399 aa Sequence Blast
gene length
1200 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ipa-21r
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    3,934,358 3,935,557

    The protein

    Protein family

  • [SW|major facilitator superfamily] (according to UniProt)

    • Structure

  • [PDB|2V8N] (E. coli lactose permease, corresponds to aa 25 ... 283, 22% identity) [pubmed|17881559]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|7EBA1CC70E1E8A73D0E7B3969522633EC42C1C2E|ywbF]-[gene|A63DF11087CEA2D8F5852E6540EFDF0EBCAB96B1|ywbE]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B223 (ywbF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1222 NBRP B. subtilis, Japan]
  • BKE38340 ([gene|7EBA1CC70E1E8A73D0E7B3969522633EC42C1C2E|ywbF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCAGGGTGCCTCCTTTGG, downstream forward: _UP4_TAATGACTATAATGAACAAA
  • BKK38340 ([gene|7EBA1CC70E1E8A73D0E7B3969522633EC42C1C2E|ywbF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCAGGGTGCCTCCTTTGG, downstream forward: _UP4_TAATGACTATAATGAACAAA

    • References

  • 220817675,17881559