SubtiBank SubtiBank
yodF [Tue Dec 13 2016 11:16:34 GMT+0100 (CET)]
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yodF [Tue Dec 13 2016 11:16:34 GMT+0100 (CET)]

similar to amino acid permease
locus
BSU19580
pI
9.68
mw
53.00 kDa
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.1|Amino acid transporters] → [category|SW 1.2.4.1.1|Solute:sodium symporter family]
  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.1|Amino acid transporters] → [category|SW 1.2.4.1.7|Sodium-solute symporter]
  • [category|SW 2|Metabolism] → [category|SW 2.3|Amino acid/ nitrogen metabolism] → [category|SW 2.3.4|Putative amino acid transporter]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [SW|Categories] containing this gene/protein

  • [SW|transporters/ other], [SW|putative amino acid transporter], [SW|membrane proteins]
  • This gene is a member of the following [SW|regulons]

  • [SW|TnrA regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    2,130,377 -> 2,131,867

    The protein

    Catalyzed reaction/ biological activity

  • in some database, the protein is annotated as being similar to proline permease, however, it is not involved in proline transport [Pubmed|24142252]
  • Protein family

  • solute:sodium symporter family (SSS family)
  • Paralogous protein(s)

  • [protein|search|YhjB]
  • [SW|Localization]

  • membrane [Pubmed|18763711]
  • Expression and Regulation

    Operon

  • ''[protein|search|yoyD]-[protein|search|yodF]'' [Pubmed|22383849]
  • Regulation

  • repressed by casamino acids [Pubmed|12107147]
  • repressed in the absence of good nitrogen sources (glutamine or ammonium) ([protein|search|TnrA]) [Pubmed|12823818]
  • Regulatory mechanism

  • [protein|search|TnrA]: transcription repression [Pubmed|12823818]
  • Biological materials

    Mutant

  • available in [SW|Erhard Bremer]'s lab [Pubmed|24142252]
  • GP1887 (kan) available in [SW|Jörg Stülke]'s lab
  • References

  • 12823818,22383849,12107147,18763711,24142252,25755103