SubtiBank SubtiBank
yqcK
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yqcK

similar to C-As lyase
locus
BSU_25800
pI
5.05
mw
16.49 kDa
protein length
146 aa Sequence Blast
gene length
441 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.11|Resistance against toxic metals]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.3|Skin element]

    • Gene

    Coordinates
    2,656,816 2,657,256

    The protein

    [SW|Domains]

  • [SW|VOC domain] (aa 2-118) (according to UniProt)

    • Structure

  • [PDB|5D4F] (from Thermomonospora curvata, 37% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|B3D88B9C89154B77D77FB833CA16FD4F4E29FE96|arsR]-[gene|74B1AF103E6B236609CD184A1A409A9A04857181|yqcK]-[gene|B749D54249A28A471EF796903A34622A16D5B0BB|arsB]-[gene|DB3527FB78D0B7C144D1699D665788184F19AFE0|arsC]
    description
    [Pubmed|9537360]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|9537360], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|16497325], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]

    • regulatory mechanism

  • [protein|B3D88B9C89154B77D77FB833CA16FD4F4E29FE96|ArsR]: repression, [Pubmed|9537360], in [regulon|B3D88B9C89154B77D77FB833CA16FD4F4E29FE96|ArsR regulon]

    • regulation

  • expressed early during sporulation in the forespore ([protein|search|SigF]) [Pubmed|16497325]
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    Biological materials

    Mutant

  • BKE25800 ([gene|74B1AF103E6B236609CD184A1A409A9A04857181|yqcK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE25800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTAATTCCCCCTCTTA, downstream forward: _UP4_TAGTAAAAAAGGTGAGGATA
  • BKK25800 ([gene|74B1AF103E6B236609CD184A1A409A9A04857181|yqcK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK25800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTAATTCCCCCTCTTA, downstream forward: _UP4_TAGTAAAAAAGGTGAGGATA

    • References

  • 9537360,16497325