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trmB [2019-01-30 12:55:33]
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trmB [2019-01-30 12:55:33]

tRNA (m7G46) methyltransferase
locus
BSU29900
pI
6.35
mw
24.36 kDa
protein length
213 aa Sequence Blast
gene length
642 bp Sequence Blast
function
tRNA modification
product
tRNA (m7G46) methyltransferase
essential
no
ec
2.1.1.33
synonyms
ytmQ
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.8|tRNA modification and maturation]

    • Gene

    Coordinates
    3,059,547 3,060,188

    The protein

    Catalyzed reaction/ biological activity

  • S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N(7)-methylguanine (according to Swiss-Prot)

    • Protein family

  • TrmB family (according to Swiss-Prot)

    • [SW|Cofactors]

  • S-adenosylmethionine [pubmed|16600901]

    • Structure

  • [PDB|2FCA] [pubmed|16600901]

    • Expression and Regulation

    Operons

    genes
    [gene|73ED086EED7CECBE2FCADFBC964F1263CF825DB0|trmB]
    description
    [Pubmed|9387221]
    view in new tab

    Biological materials

    Mutant

  • GP2649 ([gene|73ED086EED7CECBE2FCADFBC964F1263CF825DB0|trmB]::''cat''), available in [SW|Jrg Stlke]'s lab
  • MGNA-A435 (ytmQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/435 NBRP B. subtilis, Japan]
  • BKE29900 ([gene|73ED086EED7CECBE2FCADFBC964F1263CF825DB0|trmB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29900 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGATTGACACCTCTAT, downstream forward: _UP4_TAAAGACAGACTCTGACAGG
  • BKK29900 ([gene|73ED086EED7CECBE2FCADFBC964F1263CF825DB0|trmB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29900 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGATTGACACCTCTAT, downstream forward: _UP4_TAAAGACAGACTCTGACAGG

    • References

  • 16600901,9387221,27965289