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yodB [Tue Dec 13 2016 11:16:34 GMT+0100 (CET)]
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yodB [Tue Dec 13 2016 11:16:34 GMT+0100 (CET)]

MarR/DUF24 family transcription repressor of azoR1, catD-catE and yodC expression
locus
BSU19540
pI
4.00
mw
12.00 kDa
function
regulation of quinone and diamide detoxification
product
MarR/DUF24 family transcription repressor
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.5|Transcription factors/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.8|Resistance against oxidative and electrophile stress]
  • [SW|Categories] containing this gene/protein

  • [SW|transcription factors and their control], [SW|resistance against oxidative and electrophile stress]
  • This gene is a member of the following [SW|regulons]

  • [SW|YodB regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    2,127,345 -> 2,127,683

    Phenotypes of a mutant

  • increased resistance to catechol, quinones and diamide [Pubmed|20639328]
  • The protein

    Protein family

  • [[MarR/DUF24 family]]
  • Paralogous protein(s)

  • [protein|search|CatR]
  • Modification

  • redox-controlled by intersubunit disulfide formation of Cys6 and Cys101' in response to quinones and diamide
  • Effectors of protein activity

  • responds distinctly to diamide or methyl-p-benzoquinone [Pubmed|27531959]
  • Structure

  • [PDB|5HS7] (reduced form) [Pubmed|27531959]
  • [PDB|5HS8] (diamide-treated form) [Pubmed|27531959]
  • [PDB|5HS9] (quinone-bound form) [Pubmed|27531959]
  • Expression and Regulation

    Regulation

  • subject to autorepression [Pubmed|21749987]
  • Regulatory mechanism

  • YodB: transcription repression [Pubmed|21749987]
  • Additional information

  • responds distinctly to diamide or methyl-p-benzoquinone [Pubmed|27531959]
  • Biological materials

    Mutant

  • BKE19540 ''yodB''::''erm trpC2'' is available from the Bacillus Genetic Stock Center
  • Labs working on this gene/protein

  • [SW|Haike Antelmann],University of Greifswald, Germany
  • References

    Reviews

  • 18282125,20626317
  • Original Publications

  • 17158660,17407181,18208493,20639328,20652907,21749987,27531959