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yonR
similar to transcription regulator ([SW|Xre family])
Genomic Context
categories
[category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity][category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]Gene
Coordinates
2,221,061 2,221,387
The protein
Protein family
[SW|Xre family]Paralogous protein(s)
[protein|846161AE54F170075F2B2133A8D56FE39A5AF8D9|SknR] [SW|Domains]
[SW|HTH cro/C1-type domain] (aa 6-60) (according to UniProt)Expression and Regulation
Operons
genes
[gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR]-[gene|8FAC496D7A28DA74A7F866AF24C842F733EE20BE|yonS]
description
[Pubmed|29794222]
regulation
the mRNA is processed between [gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR] and [gene|8FAC496D7A28DA74A7F866AF24C842F733EE20BE|yonS] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]view in new tabBiological materials
Mutant
BKE21020 ([gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE21020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGTAGGTTCCTCACTTT, downstream forward: _UP4_TAGTAGCTATTCTTAATTCTBKK21020 ([gene|71012848B12CB7BCDEEACDAC6AD1966A971F8FAB|yonR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK21020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGTAGGTTCCTCACTTT, downstream forward: _UP4_TAGTAGCTATTCTTAATTCTReferences
