SubtiBank SubtiBank
yckB
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yckB

similar to amino acid [SW|ABC transporter] (binding protein)
locus
BSU_03380
pI
8.49
mw
31.57 kDa
protein length
287 aa Sequence Blast
gene length
864 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    367,995 368,858

    The protein

    Protein family

  • [SW|bacterial solute-binding protein 3 family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|2056F8EEDF9D3027CFD808E8D0C5DF544DBDD3F3|TcyA]

    • Structure

  • [PDB|2IEE]

    • [SW|Localization]

  • associated to the membrane (via [protein|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|YckA]) [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]-[gene|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|yckA]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C053 (yckB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2051 NBRP B. subtilis, Japan]
  • CS208 (''[gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]''::''aphA3'', available in [SW|Colin Harwood]'s and [SW|Jörg Stülke]'s labs) [Pubmed|27197833]
  • BKE03380 ([gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCTATAGTTCCCCCAATC, downstream forward: _UP4_GACGTTGATTTGTAATCGGA
  • BKK03380 ([gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCTATAGTTCCCCCAATC, downstream forward: _UP4_GACGTTGATTTGTAATCGGA

    • References

  • 10092453,23038252,27197833