SubtiBank SubtiBank
yocD
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yocD

similar to immunity to bacteriotoxins
locus
BSU_19170
pI
5.58
mw
36.25 kDa
protein length
325 aa Sequence Blast
gene length
978 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]

    • Gene

    Coordinates
    2,088,257 2,089,234

    The protein

    Protein family

  • peptidase S66 family (with [protein|C4F85F85F0C99A59145961E34B19D3AD03D2BC22|YkfA], according to UniProt)

    • Structure

  • [PDB|3SR3] (MccF from ''B. anthracis'', 33% identity, 66% similarity)

    • Expression and Regulation

    Operons

    genes
    [gene|CF8F38491E7DBDE77899D47E133B84DBB37C262C|yocC]-[gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B413 (yocD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1412 NBRP B. subtilis, Japan]
  • BKE19170 ([gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
  • BKK19170 ([gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT

    • References

  • 20817675