SubtiBank SubtiBank
ysnD
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ysnD

inner spore coat protein
locus
BSU_28320
pI
8.48
mw
11.58 kDa
protein length
111 aa Sequence Blast
gene length
336 bp Sequence Blast
function
protection of the spore
product
spore coat protein
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.1|Spore coat proteins] → [category|SW 4.2.1.1.4|Class IV]

    • Gene

    Coordinates
    2,897,788 2,898,123

    The protein

    [SW|Localization]

  • inner spore coat, localization depends on [protein|CEBEC9CECCF445C40D793E61A2CD23175631A473|SafA] [Pubmed|22171814,19933362]

    • Expression and Regulation

    Operons

    genes
    [gene|5FA26477DF2CE415AB20319853FCB77ABAC71316|ysnD]
    description
    [Pubmed|12480901]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|12480901], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]
  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|15699190,15383836], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]

    • regulatory mechanism

  • [protein|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE]: repression, [Pubmed|15383836], in [regulon|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE regulon]
  • [protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA]: activation, [Pubmed|25755103], in [regulon|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA regulon]

    • regulation

  • expressed during sporulation in the mother cell ([protein|search|SigE], [protein|search|SigK], [protein|search|GerE]) [Pubmed|15699190,15383836,12480901]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-A993 (ysnD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/993 NBRP B. subtilis, Japan]
  • BKE28320 ([gene|5FA26477DF2CE415AB20319853FCB77ABAC71316|ysnD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTATCACCTTTTCTTT, downstream forward: _UP4_TAAAGAATACCACAAGGGCC
  • BKK28320 ([gene|5FA26477DF2CE415AB20319853FCB77ABAC71316|ysnD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGTATCACCTTTTCTTT, downstream forward: _UP4_TAAAGAATACCACAAGGGCC

    • References

  • 19933362,15699190,15383836,12480901,22171814,25755103