SubtiBank SubtiBank
ylaC
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ylaC

[SW|RNA polymerase] ECF-type [SW|sigma factor] YlaC
locus
BSU_14730
pI
9.28
mw
20.78 kDa
protein length
173 aa Sequence Blast
gene length
522 bp Sequence Blast
function
[category|SW 3.2.1|Transcription]
product
[SW|RNA polymerase] ECF-type [SW|sigma factor] YlaC
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.2|RNA synthesis and degradation] → [category|SW 3.2.1|Transcription] → [category|SW 3.2.1.2|Sigma factors]
  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.1|Sigma factors and their control] → [category|SW 3.4.1.1|Sigma factors]

    • Gene

    Coordinates
    1,544,085 1,544,606

    The protein

    Protein family

  • [SW|Sigma-70 factor family] (according to UniProt)
  • [SW|ECF subfamily] (according to UniProt)

    • Effectors of protein activity

  • [protein|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|YlaD] acts as anti-sigma [Pubmed|16728958]

    • Structure

  • [PDB|5WUQ] ([protein|search|SigW ]in complex with the cytoplasmic domain of [protein|4E720917045032E8B45CB8AF6E5C13AE0E48EE33|RsiW], 33% identity) [pubmed|28319136]

    • Expression and Regulation

    Operons

    genes
    [gene|6BB9336E8F5007274026A89BFC3744B52F28E42D|ylaA]-[gene|0703D458DB489F49150DD9E3477A87DC354A7B7F|ylaB]-[gene|544344B61A804F367BB726976E0C87B61998490A|ylaC]-[gene|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|ylaD]
    description
    [Pubmed|16501307]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|16501307], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|544344B61A804F367BB726976E0C87B61998490A|YlaC]: sigma factor, [Pubmed|16501307], in [regulon|544344B61A804F367BB726976E0C87B61998490A|YlaC regulon]

    • regulatory mechanism

  • [protein|2C6386E9A63F410558D168798D077DF91590F454|Spx]: activation, [Pubmed|16501307], in [regulon|2C6386E9A63F410558D168798D077DF91590F454|Spx regulon]

    • regulation

  • [protein|search|Spx]: transcription activation [Pubmed|16501307]
    • view in new tab

    genes
    [gene|544344B61A804F367BB726976E0C87B61998490A|ylaC]-[gene|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|ylaD]
    description
    [Pubmed|16501307]

    regulation

  • [protein|search|Spx]: transcription activation [Pubmed|16501307]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B356 (ylaC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1355 NBRP B. subtilis, Japan]
  • 1A908 ( ''ylaC''::''kan''), [Pubmed|15838020], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A908&Search=1A908 BGSC]
  • BKE14730 ([gene|544344B61A804F367BB726976E0C87B61998490A|ylaC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE14730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTCAATGGAATCCCTATGCT, downstream forward: _UP4_AAAAGTAGAGAGGAGGAGCG
  • BKK14730 ([gene|544344B61A804F367BB726976E0C87B61998490A|ylaC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK14730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CTCAATGGAATCCCTATGCT, downstream forward: _UP4_AAAAGTAGAGAGGAGGAGCG

    • References

    Reviews

  • 24921931

    • Original publications

  • 16501307,16728958,17675383,20817771,28319136,29760236