SubtiBank SubtiBank
yabN
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yabN

similar to nucleoside triphosphate pyrophosphohydrolase
locus
BSU_00580
pI
4.51
mw
55.94 kDa
protein length
489 aa Sequence Blast
gene length
1470 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    66,405 67,874

    The protein

    [SW|Domains]

  • contains a domain similar to ''E. coli'' [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG10572 ''mazG''] (nucleoside pyrophosphohydrolase) at the C-terminus (aa 240-480)

    • Structure

  • [PDB|3CRA] (E. coli MazG, corresponds to the C-terminal domain, aa 238 ... 486), 43.6% identity [pubmed|18353782]

    • Expression and Regulation

    Operons

    genes
    [gene|D6B1837075ECBEE1FEAC704DDB6795336092897F|yabM]-[gene|52D48F22CB53421EE30970D34B4861E2F8A5893D|yabN]-[gene|B0CB19A3E3E84E12BF42BB050394C8A059A89359|yabO]-[gene|035B5486A3887FC71ACC0A8FB43ED77DC44E12EA|yabP]-[gene|4DEDB27C0162409571AB4A1BB17CFE400764AE45|yabQ]-[gene|FE0E60B875E72AEF5174A89C7AE5556FF59B19D5|divIC]-[gene|8EDB1BCEEE64FDAF1C9054300751FCB420658865|yabR]
    description
    [Pubmed|11283287]

    sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|15699190,11283287], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]
  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|12207695], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]
  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|26577401], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]
  • [protein|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX]: sigma factor, [Pubmed|12207695], in [regulon|E77364F274A520FCCA9F5C9504E317B047BA29E6|SigX regulon]

    • regulation

  • expressed during sporulation ([protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]) [Pubmed|11283287]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B915 (yabN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1914 NBRP B. subtilis, Japan]
  • BKE00580 ([gene|52D48F22CB53421EE30970D34B4861E2F8A5893D|yabN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGCACCAAGTCCGACGACTG, downstream forward: _UP4_GAAACTGAGAGGAGATCATA
  • BKK00580 ([gene|52D48F22CB53421EE30970D34B4861E2F8A5893D|yabN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGCACCAAGTCCGACGACTG, downstream forward: _UP4_GAAACTGAGAGGAGATCATA

    • References

  • 11283287,26577401,18353782