You are currently viewing an outdated version of
SubtiWiki.
Please use
the newest version!
ydeP
[SW|MarR family|MarR/DUF24 family] transcription regulator
product
[SW|MarR family|MarR/DUF24 family] transcription regulator
Genomic Context
categories
[category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]Gene
Coordinates
575,712 576,098
The protein
Protein family
[SW|MarR family|MarR/DUF24 family]Paralogous protein(s)
[protein|73AFDF65BE89C0E2CC59AF2AF64C29BD99D785DF|YodB], [protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|HypR], [protein|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|YkvN], [protein|D9A187961CFB9496A6712E9E48AAD384357A3E1C|HxlR], [protein|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|YdzF], [protein|1E74F0557FF9ECB404B6544831F4E0A162473423|YtcD] [SW|Domains]
[SW|HTH hxlR-type domain] (aa 18-116) (according to UniProt)Structure
[PDB|4A5M] ([protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|HypR], 71% identity) [pubmed|22238377]Expression and Regulation
Operons
genes
[gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-C167 (ydeP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2165 NBRP B. subtilis, Japan]BKE05290 ([gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA, downstream forward: _UP4_TAATAACCAGAAAAAATACCBKK05290 ([gene|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA, downstream forward: _UP4_TAATAACCAGAAAAAATACCReferences
