SubtiBank SubtiBank
ykvO [2018-02-13 12:09:58]
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ykvO [2018-02-13 12:09:58]

similar to glucose 1-dehydrogenase
locus
BSU13770
pI
4.56
mw
26.10 kDa
protein length
248 aa Sequence Blast
gene length
744 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    1,442,872 → 1,443,618

    The protein

    Paralogous protein(s)

  • [protein|0DD474462720CAEE2AE17017BD7CA385238EBC6F|YxbG] (36%), [protein|CA4597C6253CCF7D7954686A30AF041808BDF8E5|Gdh] (34,8%), [protein|3161519994609DA9360ED6E073E4A4C8C6210EFB|YdaD] (37,6%),[protein|B6FF689E65906186F3576B378650D713DB84EDDA|YcdF] (31,9%), [protein|439B468A13137000FB42E9389391CB4986FFED84|FabG] (32,2%), [protein|5964B6E817260DA7937796DDFA753A665A04D650|FabL] (31,8%), [protein|20A7DBA142F3BF8DCAD9732BD908CE8CC79AA993|BacC] (32,8%), [protein|EAEEA4DD9641919830A81185333A2610B964D37C|YhdF] (35,1%), [protein|6047F2493FCE3D2A9BDB1AD88E5926ECEED81036|YhxC] (32,5%), [protein|739B228743BC1FE9E6888E999BC0E4F615E36F9E|YhxD] (34,5%), [protein|CE990D33A12C50D22506A52E0099F7D97A762D4E|FadH] (33,6%)

    • Structure

  • [PDB|4FGS] (from ''Rhizobium etli'', 57% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|4DEFC2998464BF8327578C36A13A10DD277F991E|ykvO]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B327 (ykvO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1326 NBRP B. subtilis, Japan]
  • BKE13770 (Δ[gene|4DEFC2998464BF8327578C36A13A10DD277F991E|ykvO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE13770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTTAACACTCCTTTAG, downstream forward: _UP4_TAATTTCACTGCGCAGAGAT
  • BKK13770 (Δ[gene|4DEFC2998464BF8327578C36A13A10DD277F991E|ykvO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK13770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTTAACACTCCTTTAG, downstream forward: _UP4_TAATTTCACTGCGCAGAGAT