SubtiBank SubtiBank
int [2019-06-25 09:41:02]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

int [2019-06-25 09:41:02]

integrase
locus
BSU04800
pI
9.76
mw
43.32 kDa
protein length
368 aa Sequence Blast
gene length
1107 bp Sequence Blast
function
excision of the conjugative transposon ICEBs1 from the trnS-leu2 locus
product
integrase
essential
no
synonyms
ydcL
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.2|Mobile genetic elements] → [category|SW 5.2.1|ICEBs1]

    • Gene

    Coordinates
    529,505 530,611

    The protein

    Protein family

  • [SW|'phage' integrase family] (according to UniProt)

    • Structure

  • [PDB|4A8E] (from Pyrococcus abyssi, 25% identity) [pubmed|23667562]

    • Expression and Regulation

    Operons

    genes
    [gene|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR]-[gene|1599BBAC05EB62A847F73572CD777BC472301DE8|immA]-[gene|47AE982C5E71F31B5AF04C4F50593C2629F8EDAF|int]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • BKE04800 ([gene|47AE982C5E71F31B5AF04C4F50593C2629F8EDAF|int]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTATTTCTCCTTTAAC, downstream forward: _UP4_TAGGTAAGTGGGCAGTTTGT
  • BKK04800 ([gene|47AE982C5E71F31B5AF04C4F50593C2629F8EDAF|int]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTATTTCTCCTTTAAC, downstream forward: _UP4_TAGGTAAGTGGGCAGTTTGT

    • References

  • 18005101,23667562