SubtiBank SubtiBank
ytkC [2019-07-05 12:20:38]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ytkC [2019-07-05 12:20:38]

similar to autolytic amidase
locus
BSU30640
pI
9.89
mw
15.01 kDa
protein length
134 aa Sequence Blast
gene length
405 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.3|Cell wall degradation/ turnover] → [category|SW 1.1.3.2|Autolysis/ based on similarity]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,135,668 3,136,072

    The protein

    Protein family

  • Cp-1 holin family (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|4654294F23CBF2D66C72B05ADA9CDC002A30926A|ytkC]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|26577401], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-A029 (ytkC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/29 NBRP B. subtilis, Japan]
  • BKE30640 ([gene|4654294F23CBF2D66C72B05ADA9CDC002A30926A|ytkC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATCCCAACATCCTTT, downstream forward: _UP4_TAACTTTTCCCTGTTCGCGG
  • BKK30640 ([gene|4654294F23CBF2D66C72B05ADA9CDC002A30926A|ytkC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTATCCCAACATCCTTT, downstream forward: _UP4_TAACTTTTCCCTGTTCGCGG

    • References

  • 26577401