SubtiBank SubtiBank
ybfE [2019-06-07 08:25:50]
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ybfE [2019-06-07 08:25:50]

unknown
locus
BSU02180
pI
9.13
mw
10.90 kDa
protein length
94 aa Sequence Blast
gene length
285 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    238,164 238,448

    The protein

    [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]-[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]-[gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]
    description
    [Pubmed|22383849]

    regulation

  • the mRNA is processed between [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG] and [gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
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    Biological materials

    Mutant

  • MGNA-B966 (ybfE::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1965 NBRP B. subtilis, Japan]
  • BKE02180 ([gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTAAAGAATACCTTTAAT, downstream forward: _UP4_TAATCTCGAAATCAGAGATG
  • BKK02180 ([gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTAAAGAATACCTTTAAT, downstream forward: _UP4_TAATCTCGAAATCAGAGATG