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darA [2020-10-28 09:16:41]
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darA [2020-10-28 09:16:41]

c-di-AMP-binding PII-like protein [gene|68F4E792B99F86AE9E8F06D2200E128937331F5D|glnA] [protein|44DF1B7E476AD58B3CCC39300FFE0132D0D32AD0|GltA] [PDB|4RLE] [pubmed|25433025] H2O
locus
BSU_00290
pI
6.09
mw
11.83 kDa
protein length
109 aa Sequence Blast
gene length
330 bp Sequence Blast
function
unknown
product
c-di-AMP-binding PII-like protein
synonyms
yaaQ
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.5|Targets of second messengers] → [category|SW 3.5.1|Targets of c-di-AMP]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    39,871 40,200

    The protein

    Effectors of protein activity

  • binds c-di-AMP [Pubmed|25433025]

    • Structure

  • [PDB|4RLE] (the ''B. subtilis'' protein in complex with c-di-AMP) [Pubmed|25433025]

    • Expression and Regulation

    Operons

    genes
    [gene|08314FA6195D553B8522BCD3B45FEE0EAB51F64D|xpaC]-[gene|5231A0EE9C5A7556817B686D5B2B7B72B675BCAC|yaaN]-[gene|EEF3E572ED2F23581EB9B48D16B3112B886F7975|yaaO]-[gene|5B9984BBCEC1244628DC1467BE26976AD8E06286|tmk]-[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]-[gene|DC867376EF4F9CC7663A9B76AA260AC3CA11595A|holB]-[gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|yaaT]-[gene|A039228A3805F4E7C5C2AE31C7DB0808562E88E3|yabA]-[gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]-[gene|47859E62AABA5A57AC6F5F80CDE4ED52FC7F879F|yazA]-[gene|FB71FFDEABF17228CA2BD5F3DE0C8A9A2C22485D|yabC]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]-[gene|DC867376EF4F9CC7663A9B76AA260AC3CA11595A|holB]-[gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|yaaT]-[gene|A039228A3805F4E7C5C2AE31C7DB0808562E88E3|yabA]-[gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]-[gene|47859E62AABA5A57AC6F5F80CDE4ED52FC7F879F|yazA]-[gene|FB71FFDEABF17228CA2BD5F3DE0C8A9A2C22485D|yabC]
    description
    [Pubmed|22383849]

    regulation

  • expressed during growth and the transition phase, expression is erduced in stationary phase [Pubmed|23490197]
    • view in new tab

    genes
    [gene|5B9984BBCEC1244628DC1467BE26976AD8E06286|tmk]-[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]-[gene|DC867376EF4F9CC7663A9B76AA260AC3CA11595A|holB]-[gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|yaaT]-[gene|A039228A3805F4E7C5C2AE31C7DB0808562E88E3|yabA]-[gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]-[gene|47859E62AABA5A57AC6F5F80CDE4ED52FC7F879F|yazA]-[gene|FB71FFDEABF17228CA2BD5F3DE0C8A9A2C22485D|yabC]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B897 (yaaQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1896 NBRP B. subtilis, Japan]
  • GP1712 (''[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]''::''cat''), available in [SW|Jörg Stülke]'s lab [Pubmed|25433025]
  • GP1713 (''[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]''::''cat''), available in [SW|Jörg Stülke]'s lab
  • GP2406 (''[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]''::''ermC''), available in [SW|Jörg Stülke]'s lab
  • GP2415 (''[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]''::''spc''), available in [SW|Jörg Stülke]'s lab
  • GP2497 (''[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]''::''tet''), available in [SW|Jörg Stülke]'s lab
  • BKE00290 ([gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTGAAGGCCTCCTTT, downstream forward: _UP4_CATCAATTTTAAGGATCTGA
  • BKK00290 ([gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00290 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTGTGAAGGCCTCCTTT, downstream forward: _UP4_CATCAATTTTAAGGATCTGA

    • Expression vectors

  • pGP2797: expression of ''darA'' (native RBS) by [SW|pBQ200] in ''B. subtilis'', available in [SW|Jörg Stülke]'s lab
  • pGP3002: expression of ''darA'' (''gapA'' RBS) by [SW|pBQ200] in ''B. subtilis'', available in [SW|Jörg Stülke]'s lab
  • pGP2601: IPTG inducible expression, purification in ''E. coli'' with N-terminal His-tag, in [SW|pWH844], available in [SW|Jörg Stülke]'s lab [Pubmed|25433025]
  • pGP1690: IPTG inducible expression, purification in ''E. coli'' with N-terminal cleavable His-tag, in [SW|pGP570], available in [SW|Jörg Stülke]'s lab
  • pGP2624: IPTG inducible expression, purification in ''E. coli'' with N-terminal Strep-tag, in [SW|pGP172], available in [SW|Jörg Stülke]'s lab
  • pGP2602: expression of Strep-''darA'' by [SW|pGP380] in ''B. subtilis'' suitable for [SW|SPINE], available in [SW|Jörg Stülke]'s lab
  • pGP2603: expression of ''darA''-Strep by [SW|pGP382] in ''B. subtilis'' suitable for [SW|SPINE], available in [SW|Jörg Stülke]'s lab
  • pGP2847: expression of His6-''darA'' (''gapA'' RBS) by [SW|pBQ200] in ''B. subtilis'', available in [SW|Jörg Stülke]'s lab
  • GP2010: expression of ''darA''-Strep in ''B. subtilis'' (chromosomal), suitable for [SW|SPINE], available in [SW|Jörg Stülke]'s lab

    • two-hybrid system

  • ''B. pertussis'' adenylate cyclase-based bacterial two hybrid system ([SW|BACTH]), available in [SW|Jörg Stülke]'s lab

    • Antibody

  • available in [SW|Jörg Stülke]'s lab

    • labs

  • [SW|Jörg Stülke], University of Göttingen, Germany [http://genmibio.uni-goettingen.de Homepage]

    • References

    Reviews

  • 25869574,32095817,32472931,32603625

    • Original publications

  • 22383849,25433025