SubtiBank SubtiBank
yokF [2019-09-17 12:08:04]
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yokF [2019-09-17 12:08:04]

similar to micrococcal nuclease
locus
BSU_21610
pI
8.40
mw
32.85 kDa
protein length
296 aa Sequence Blast
gene length
891 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.2|SP-beta prophage]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    2,279,977 2,280,867

    The protein

    Paralogous protein(s)

  • [protein|91E6B4971F22B5A5F964590F8B14D6C73A4C4840|YncB]

    • [SW|Domains]

  • TNase-like (aa 66-199) (according to UniProt)

    • Structure

  • [PDB|4I65] (from Staphylococcus aureus, corresponds to aa 71 ... 198 of YncB, 57% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|27F32FB0F96276325ED93710DF77B949658D728D|yokF]-[gene|C4C5A7CCD4B02EC846A40C52574A1092D5A95F68|yokE]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • BKE21610 ([gene|27F32FB0F96276325ED93710DF77B949658D728D|yokF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE21610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTTCATTTCCCCTTTTA, downstream forward: _UP4_TGTGAACGATGAAAGGAGAT
  • BKK21610 ([gene|27F32FB0F96276325ED93710DF77B949658D728D|yokF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK21610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTTCATTTCCCCTTTTA, downstream forward: _UP4_TGTGAACGATGAAAGGAGAT