SubtiBank SubtiBank
ywqA
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ywqA

similar to SNF2 helicase
locus
BSU_36280
pI
5.01
mw
105.83 kDa
protein length
922 aa Sequence Blast
gene length
2769 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.8|Genetics/ other/ based on similarity]

    • Gene

    Coordinates
    3,735,449 3,738,217

    The protein

    Protein family

  • [SW|helicase family] (according to UniProt)
  • SNF2/RAD54 helicase family (with [protein|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|YqhH], according to UniProt)

    • [SW|Domains]

  • [SW|Helicase ATP-binding domain] (aa 462-625) (according to UniProt)
  • [SW|Helicase C-terminal domain] (aa 753-907) (according to UniProt)

    • Structure

  • [PDB|1Z6A] (from Sulfolobus solfataricus, the C-terminal domain (aa 445 ... 919), 47% identity) [pubmed|15882619]

    • Expression and Regulation

    Operons

    genes
    [gene|6AFE06E2F5A5382FBC656E6D532E1D8BFECC4DC2|ywqB]-[gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA]
    description
    [Pubmed|22383849]

    additional information

  • An [ncRNA|search|antisense RNA] is predicted for [gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA] [PubMed|20525796]
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    Biological materials

    Mutant

  • MGNA-A532 (ywqA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/532 NBRP B. subtilis, Japan]
  • BKE36280 ([gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGTTCGACGTGGATGAGAA, downstream forward: _UP4_TAATCATGACTAAAAAAGCT
  • BKK36280 ([gene|265490FA83D6D3F178C26C9240E3CB224513BF42|ywqA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGTTCGACGTGGATGAGAA, downstream forward: _UP4_TAATCATGACTAAAAAAGCT

    • References

  • 9353933,20525796,24147116,15882619