SubtiBank SubtiBank
ydaB
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ydaB

similar to acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)
locus
BSU_04170
pI
4.85
mw
51.07 kDa
protein length
503 aa Sequence Blast
gene length
1512 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    469,426 470,937

    The protein

    Protein family

  • [SW|ATP-dependent AMP-binding enzyme family] (according to UniProt)

    • Structure

  • [PDB|3R44] (from Mycobacterium tuberculosis, 33% identity) [pubmed|22560731]

    • Expression and Regulation

    Operons

    genes
    [gene|2436420C7781DCB61B9A939B47747265E23740A5|ydaB]
    description
    [Pubmed|21815947]

    additional information

  • the mRNA is substantially stabilized upon depletion of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] (the half-life of the mRNA increases from 2 to 80 min) [PubMed|21815947]
    • view in new tab

    Biological materials

    Mutant

  • BKE04170 ([gene|2436420C7781DCB61B9A939B47747265E23740A5|ydaB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCGTCATCTCCTATAT, downstream forward: _UP4_TCATAAAAGAAGAAGCCCGT
  • BKK04170 ([gene|2436420C7781DCB61B9A939B47747265E23740A5|ydaB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCGTCATCTCCTATAT, downstream forward: _UP4_TCATAAAAGAAGAAGCCCGT

    • References

  • 1460045,21815947,22560731