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rapF [Tue Dec 13 2016 11:16:37 GMT+0100 (CET)]
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rapF [Tue Dec 13 2016 11:16:37 GMT+0100 (CET)]

response regulator aspartate phosphatase, anti-activator protein, controls ComA activity
locus
BSU37460
pI
5.18
mw
45.00 kDa
function
control of ComA activity
product
response regulator aspartate phosphatase
essential
no
synonyms
ywhJ

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.7|Genetic competence]
  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.4|Protein modification] → [category|SW 3.3.4.4|Protein phosphatases]
  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.2|Control of two-component response regulators] → [category|SW 3.4.2.2.2|Response regulator aspartate phosphatase]
  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.8|Quorum sensing]
  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.3|Genetic competence]
  • [SW|Categories] containing this gene/protein

  • [SW|genetic competence], [SW|protein modification], [SW|transcription factors and their control], [SW|quorum sensing]
  • This gene is a member of the following [SW|regulons]

  • [SW|CcpA regulon], [SW|ComA regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    3,846,001 -> 3,847,146

    The protein

    Catalyzed reaction/ biological activity

  • control of [protein|search|ComA] activity [Pubmed|15968044]
  • Protein family

  • RAP family (according to Swiss-Prot)
  • Effectors of protein activity

  • binding of [protein|search|PhrF] to [protein|search|RapF] results in a conformational change of [protein|search|RapF] and prevents it from binding [protein|search|ComA] [Pubmed|15968044,22215984]
  • Structure

  • [PDB|3ULQ] (structure of the complex between the DNA-binding C-terminal domain of [protein|search|ComA] with [protein|search|RapF]) [Pubmed|22215984]
  • [SW|Interactions]

  • [protein|search|RapF]-[protein|search|ComA] [Pubmed|15968044,22215984]
  • [protein|search|RapF]-[protein|search|PhrF] [Pubmed|15968044,22215984]
  • Expression and Regulation

    Operon

  • ''[protein|search|rapF]-[protein|search|phrF]'' [Pubmed|11466295]
  • Regulation

  • repressed by glucose (5-fold) ([protein|search|CcpA]) [Pubmed|12850135]
  • Regulatory mechanism

  • [protein|search|CcpA]: transcription repression [Pubmed|12850135]
  • [protein|search|ComA]: transcription activation [Pubmed|15968044]
  • References

  • 12850135,15968044,11466295,16091051,22215984